The poor use of chemoprophylaxis is not restricted to African VFR

The poor use of chemoprophylaxis is not restricted to African VFRs, and can occur irrespective of ethnicity. Fifty-six patients with falciparum malaria who visited the Gambia (a popular tourist destination for indigenous British holidaymakers) had not used chemoprophylaxis.19 The results from this review demonstrate that research among VFRs to date has

focused on individual risk factors for malaria and on recent travel or planned journeys. Furthermore, the data available provide only a superficial understanding of some of the factors that may be influencing behaviors that result in the high incidence of imported malaria seen in the African Diaspora. However, in such research, it is important to recognize that VFRs are far from a homogenous group and additional research into the nature and extent of variation in knowledge, attitudes, selleck chemicals llc and behaviors relating to malaria among the various groups that make up the African Diaspora Ceritinib across Europe is required. While there are some race-based biological factors (sickle-cell trait and G6PD deficiency) that contribute to perceptions of risk, in terms of ethnicity it is unlikely if there are discernible patterns of behavior that

can be applied to the whole ethnic populations, let alone across populations from different backgrounds. This applies particularly to issues such as the taste of antimalarial tablets and fear of side effects which are not influenced by ethnicity, and care must be taken to not overly attribute failure to access malaria protection to cultural reasons alone. Although most impact on reducing the incidence of imported malaria can be made by focusing on interventions in the African community, understanding why other travelers put themselves

at risk will also be important. The results from the review also suggest that there is a need for primary research using qualitative methodology to investigate the context within which personal decisions are made about malaria prevention. For example, Endonuclease the cumulative effect of disease-free successive journeys may affect perceptions and reduce perceived risk of disease. Although there are differences in the etiology of disease, future themes could be drawn from research in other diseases that disproportionately affect the African Diaspora, such as HIV and TB. Studies into the former, in particular, have recognized the importance of the socioeconomic and structural contexts within which decisions are made about health.20,21 Finally, research undertaken so far has focused on chemoprophylaxis. Mosquito bite prevention measures are also important with respect to malaria prevention, and there is a need to understand factors that restrict or influence VFRs from using these. The few researchers who have investigated knowledge, attitudes, and practices about malaria in the African Diaspora in Europe have made some valuable initial findings and have highlighted the need for agreement on definitions.

All the pharmacists reported good relationships with their servic

All the pharmacists reported good relationships with their service users. All service users described satisfactory relationships with their current

community pharmacist but some reported problems with previous community pharmacists. In general, service users whose pharmacists had expressed a positive view regarding the value of substitution therapy reported a stronger motivation to remain in treatment. All service users remained in treatment for the limited duration of the study. The similarity of common themes indicates a good mutual understanding by both parties of each other’s priorities. However, unsurprisingly, each group of interviewees had different concerns in relation to each of these themes; e.g. pharmacists were concerned about safety and security in the pharmacy, whereas service users’ main concerns ABT-199 nmr were respect and privacy. Even those pharmacists who were least sceptical about the value of treatment, and who appeared to have the best rapport with their service users, expressed doubts about long term outcomes for service users. This research question would merit further exploration in a larger, longer term study to determine how pharmacists’ views affect treatment completion rates. 1. Matheson, C., Bond, C.M. & Mollison, J. Attitudinal factors associated with community pharmacists’ involvement in services for drug misusers. Addiction selleck chemical 1999; 94: 1349–1359. 2. Simpson, D. D., Joe, G. W., Rowan-Szal, G. A., & Greener,

J. M. Drug abuse treatment process components that improve retention. Journal of Substance Abuse Treatment 1997; 14: 565–572. Christine Bond1, Emma Scobie Scott1, Peter Helms1, David Shaw2, John Haughney1 1University of Aberdeen, Aberdeen, UK, 2Institute PJ34 HCl for Biomedical Ethics, Basel, Switzerland This study explored the acceptability, to parents and young people, of linking routinely acquired NHS data for paediatric pharmaco-vigilance? Themes identified were safety, privacy/confidentiality, data

linkage, trust, and public engagement. A paediatric pharma-covigilance database derived from linkage of routinely collected health-care data was understood and acceptable Off-label prescribing is common in children (1) and a recognised risk factor for adverse drug reactions (ADRs) (2). Under reporting of ADRs using the UK Yellow Card Scheme may delay identification of ADRs and impact on the quality of prescribing. In Scotland the Community Health Index (CHI) number (a unique personal identifier) is included in the majority of records of all NHS contacts. These include primary care, secondary care and dispensing information. Recent advances in archiving have facilitated deterministic linkage of data, from different datasets, at individual patient level. The aim of this study was to assess the acceptability of this linkage, to young people and concerned adults, for the purpose of paediatric pharmaco-vigilance. This study is part of the CHIMES programme of work (Child Medical Records for Safer Medicines).

, 2007), and a blue light–inducible

phosphodiesterase

, 2007), and a blue light–inducible

phosphodiesterase PARP inhibitor (PDE) activity, specific for hydrolysis of cyclic di-GMP (c-di-GMP), has been identified in a recombinant protein from Synechococcus elongates (Cao et al., 2010). We have found that some mutant reduction/activation of Xcc growth is related to the intensity of the sensing light, so the degree of reduction/activation of some light sensitivity mutants possibly depends not only on the light wavelength but also on light intensity, which may be why different responses were caused by different sensing light, such as red, far-red, blue and white light, a mixture model of visible light. Thirteen PAS proteins that respond to light signals displayed effects LDK378 on bacterial growth and motility and were thought to be involved in photo-signalling in Xcc. These 13 proteins belong to three broad functional groups, HK, GGDEF-characterized protein and hybrid HK. Four

of these proteins are involved in tricolour (blue, red and far-red) signalling, which contain more than one PAS domain in each protein, and these PAS domains are involved in different clusters of Fig. 1c. It is, therefore, possible that proteins detecting multiple colours do so through the combinatorial action of tandem PAS domains, each responding to a subset of the total protein spectrum. The remaining 20 PAS proteins had no effect on Xcc growth in our assays. The virulence of Xcc mutants was tested by host plant inoculation as described previously (Marie et al., 2004; Lu et al., 2007a, b; Ryan et al., 2007) under light of a defined intensity (strong light of 12 000 lux and weak light of 2000 lux). Some host plants exhibited different levels Miconazole of H2O2, salicylic acid and expression of defence genes such as PR-1, when exposed to changing light conditions (Wang et al., 2010). Previous research has shown that light plays a critical role in the defence response of rice plants (Guo et al., 1993). Increased illumination resulted in thicker leaves and a greater number of palisade cells, but the anticlinal

elongation of those cells is specifically responsive to the flux rate of blue light (Lopez-Juez et al., 2007). Therefore, susceptibility of host plants may vary under different light conditions, and the varying susceptibility of host plants may affect virulence tests, that is, the virulence of mutants of PAS-domain-containing proteins in this research. Because the Xcc strains that showed growth responses to monochromatic light also responded to white light, we concluded that monochromatic light is the primary trigger for PAS proteins as either singly or in conjunction with other colours. Therefore, the light-influencing virulence tests were conducted under white light instead of monochromatic light. A chemotaxis protein, XC_2504, was found to be involved in the virulence of Xcc, according to its significant reduction in LL under strong light.

The main tail fibers of xnp1 and xbp1 are mosaic structures with

The main tail fibers of xnp1 and xbp1 are mosaic structures with divergent C-terminal regions suggesting they differ in host specificity. Several genes encoding C-terminal tail fiber fragments are present in the same

position in xnp1 and xbp1. Recombination between the main fiber genes and the C-terminal fragments could potentially expand the host range specificity of xenorhabdicin in the respective strains. Bacteria are frequently subjected to infections by bacteriophage that can become resident prophage in the bacterial genome. Prophages can confer fitness advantages, virulence properties, and regions of genomic plasticity to the bacterial host (Asadulghani et al., 2009; Ogier et al., 2010). For instance, the bacteriophage gene pool of enterohemorrhagic Escherichia coli O157:H7 Apoptosis Compound Library cell assay strain Sakai contains many prophage-derived virulence compound screening assay factors (Brussow, 2006). Most of the 24 phage-related elements in E. coli O157:H7 contain genetic modifications and some are now mobile genetic elements capable of dissemination among E. coli strains upon prophage induction (Asadulghani et al., 2009). While the contributions of prophage elements to pathogenicity have been extensively studied, the role of prophage clusters in the

life cycle of mutualistic bacteria remains unclear. Members of the genus Xenorhabdus form mutualistic associations with entomopathogenic nematodes of the genus Steinernema. The bacteria reside in a specialized region of the anterior gut in the infective juvenile form of the nematode (Snyder et al., 2007). The nematode invades soil dwelling insects, migrates through the intestine, and penetrates the midgut to enter the hemocoel, where they release their symbiotic bacteria into the insect blood (hemolymph) to act as insect pathogens (Kaya & Gaugler, 1993; Forst et al., 1997; Goodrich-Blair & Clarke, 2007). Xenorhabdus nematophila provides a nutrient base for nematode reproduction and also produces antimicrobial compounds to suppress the growth of potential competitors (Morales-Soto et al., 2009). Of the 20 known Xenorhabdus species, only two have been sequenced to date; X. nematophila 19061 O-methylated flavonoid and Xenorhabdus bovienii SS-2004,

symbionts of Steinernema carpocapsae and Steinernema jollieti, respectively (Chaston et al., 2011). The ability of X. nematophila to eliminate antagonistic competitors enhances the fitness of its nematode partner (Morales-Soto & Forst, 2011). Xenorhabdus nematophila produces a phage tail-like (R-type) bacteriocin called xenorhabdicin that can kill other Xenorhabdus and Photorhabdus species (Boemare et al., 1992; Sicard et al., 2005; Morales-Soto & Forst, 2011). These proteinaceous structures resemble headless phage tail particles and are composed of conserved tail sheath and tube proteins, as well as several other structural proteins including tail fiber proteins involved in binding to target strains (Boemare et al., 1992; Baghdiguian et al., 1993; Thaler et al., 1995).

, 2006) However, none of the RI strains had more cells than C57B

, 2006). However, none of the RI strains had more cells than C57BL/6J, but more than half of the RI strains had fewer cells than in A/J (Fig. 7A). Genetic analysis using QTL interval mapping of the SGZ phenotype showed that one suggestive QTL modulated the number of proliferating SGZ cells was located on Chr 3 at 102 ± 7 Mb (genome-wide P < 0.63; LRS = 12.79; LOD = 2.77) (Fig. 7B and C). We also found that having an A allele in the QTL 3 interval selleck chemical was associated with an increase of 5 BrdU+ cells/mm in SGZ cellular proliferation when compared with RI strains with the B allele (Fig. 7C). This SGZ QTL does not correspond to those seen for the RMS, suggesting that the RMS and SGZ have region-specific molecular

mechanisms for controlling adult neurogenesis. In this study, we identified a robust QTL associated with variation in RMS cellular proliferation on mouse chromosome 11, which is syntenic with human chromosome 17q25.1. We named this novel QTL Rmspq1 and there are two prominent features of this QTL: (1) it is centered at 116.75Mb on chromosome 11, and (2) learn more it is 1.5 Mb wide as defined by the 2.0- LOD support confidence interval. A total of 36 genes, 25 known and 11 predicted, reside in this QTL interval (Table 1). Of all the genes examined, two met all our three candidate gene criteria (see Materials and methods) and are considered as priority genes for future analysis. One of them is sphingosine

kinase 1 (Sphk1), which is expressed in adult murine brain and has been implicated in cellular processes including cell proliferation and cell survival (Kohama et al., 1998; Hait et al., 2006). One major role of Sphk1 is to generate Sphingosine-1-phosphate (S1P) from its metabolic precursor sphingosine, and S1P is a lipid second messenger that plays an important role in both vasculogenesis and neurogenesis (Harada et al., 2004; Mizugishi et al., 2005). Our pathway analysis using DAVID (http://david.abcc.ncifcrf.gov:8080/)

showed Sphk1 is part of the vascular endothelial growth factor (VEGF) signaling mafosfamide pathway that when activated increases proliferation in the SVZ and also modulates migration of the neural progenitors in the RMS (Wittko et al., 2009). There are three Single Nucleotide Polymorphisms (SNPs) identified when comparing the A/J and C57BL/6J genome at the Gene Network’s variant browser. One is a synonymous SNP located in exon 5, while the remaining two SNPs – one located in intron 2 and the other in intron 5 – have unknown functions. Another gene, the galanin receptor 2 (Galr2), also emerged as a strong candidate gene that may control the number of proliferating cells in the RMS. Galr2 is the receptor for galanin, a neuropeptide involved in mood regulation that is expressed throughout the brain including SVZ, RMS and DG (Ma et al., 2008). Activation of Galr2 through the binding of galanin has been linked to increased hippocampal neurogenesis in the seizure-induced injured brain (Mazarati et al., 2004).

, 2006) However, none of the RI strains had more cells than C57B

, 2006). However, none of the RI strains had more cells than C57BL/6J, but more than half of the RI strains had fewer cells than in A/J (Fig. 7A). Genetic analysis using QTL interval mapping of the SGZ phenotype showed that one suggestive QTL modulated the number of proliferating SGZ cells was located on Chr 3 at 102 ± 7 Mb (genome-wide P < 0.63; LRS = 12.79; LOD = 2.77) (Fig. 7B and C). We also found that having an A allele in the QTL 3 interval Proteasome inhibitor was associated with an increase of 5 BrdU+ cells/mm in SGZ cellular proliferation when compared with RI strains with the B allele (Fig. 7C). This SGZ QTL does not correspond to those seen for the RMS, suggesting that the RMS and SGZ have region-specific molecular

mechanisms for controlling adult neurogenesis. In this study, we identified a robust QTL associated with variation in RMS cellular proliferation on mouse chromosome 11, which is syntenic with human chromosome 17q25.1. We named this novel QTL Rmspq1 and there are two prominent features of this QTL: (1) it is centered at 116.75Mb on chromosome 11, and (2) selleck compound it is 1.5 Mb wide as defined by the 2.0- LOD support confidence interval. A total of 36 genes, 25 known and 11 predicted, reside in this QTL interval (Table 1). Of all the genes examined, two met all our three candidate gene criteria (see Materials and methods) and are considered as priority genes for future analysis. One of them is sphingosine

kinase 1 (Sphk1), which is expressed in adult murine brain and has been implicated in cellular processes including cell proliferation and cell survival (Kohama et al., 1998; Hait et al., 2006). One major role of Sphk1 is to generate Sphingosine-1-phosphate (S1P) from its metabolic precursor sphingosine, and S1P is a lipid second messenger that plays an important role in both vasculogenesis and neurogenesis (Harada et al., 2004; Mizugishi et al., 2005). Our pathway analysis using DAVID (http://david.abcc.ncifcrf.gov:8080/)

showed Sphk1 is part of the vascular endothelial growth factor (VEGF) signaling Bay 11-7085 pathway that when activated increases proliferation in the SVZ and also modulates migration of the neural progenitors in the RMS (Wittko et al., 2009). There are three Single Nucleotide Polymorphisms (SNPs) identified when comparing the A/J and C57BL/6J genome at the Gene Network’s variant browser. One is a synonymous SNP located in exon 5, while the remaining two SNPs – one located in intron 2 and the other in intron 5 – have unknown functions. Another gene, the galanin receptor 2 (Galr2), also emerged as a strong candidate gene that may control the number of proliferating cells in the RMS. Galr2 is the receptor for galanin, a neuropeptide involved in mood regulation that is expressed throughout the brain including SVZ, RMS and DG (Ma et al., 2008). Activation of Galr2 through the binding of galanin has been linked to increased hippocampal neurogenesis in the seizure-induced injured brain (Mazarati et al., 2004).

[36] Table 2 stratifies some of the more commonly prescribed drug

[36] Table 2 stratifies some of the more commonly prescribed drugs that can induce photosensitivity

reactions by types of reactions and drug classes.[30-33] Many of the medications listed in Table 2 are frequently prescribed for travelers, such as antimalarials, or frequently included in travel first aid kits, such as analgesics. Travelers taking these medications should be warned of the potential risks of drug-induced photosensitivity reactions and encouraged to apply and to reapply high-SPF (30+) sunscreens whenever sun-exposed. The management of photosensitivity reactions includes the identification and future avoidance of the offending drug, which may require photopatch R428 solubility dmso testing, anti-inflammatory dressings and ointments, and topical and/or systemic corticosteroids.[31-33] reactions Ibuprofen Naproxen Piroxicam Sulfonamides Tetracyclines Trimethoprim Antifungals: Griseofulvin Voriconazole Antimalarials: Chloroquine Quinine Atenolol Sotalol ACEIs: Captopril Enalapril Calcium channel blockers: Verapamil Diuretics: Bumetanide Furosemide Thiazides Miscellaneous: Amiodarone Methyldopa Carbamazepine Selleckchem GSK2118436 Valproate Antipsychotics: Phenothiazines Coal tar Psoralens Retinoids Topical antimicrobials Chemotherapeutics: Fluorouracil Methotrexate Vemurafenib

Hypoglycemics: Metformin Sulfonylureas Miscellaneous additives: Furocoumarins reactions Ketoprofen Piroxicam Quinolones Sulfonamides Antifungals: Griseofulvin Quinidine Thiazides Phenothiazines Some topical sunscreen ingredients: Avobenzone Besides fair-skinned persons,

other special populations at increased risks of UV-induced skin cancers include children, organ transplant recipients Rapamycin molecular weight (OTRs), and persons with sun-sensitive genetic skin diseases. Epidemiological evidence now supports the observations that children who have suffered repeated sunburns are more likely to develop CMM as adolescents and adults than children who have never had sunburns.[6, 7, 37] In 2012, Gamble and colleagues used ultraviolet photography to examine the relationships between severity of prior sun exposure damage and phenotypic CMM risk factors in children and demonstrated that degree of sun damage correlated with all known CMM risk factors including non-Hispanic Caucasian race, red hair, blue eyes, increased facial freckling, and greater number of nevi (all p values < 0.001).[6] In 2012, Vranova and colleagues reported the results of a case-control study on the risks of prior sun exposures in childhood on the subsequent incidence of CMMs and found the number of sunburn episodes to be significantly associated with CMMs in adolescents and adults.

The chemical synapse is the most direct form of cellular communic

The chemical synapse is the most direct form of cellular communication between neurons; here, the exact apposition of pre- and postsynaptic membranes optimizes

the success of intercellular communication via transmitter diffusion. Many other forms of cellular communication in the brain seem to rely on the diffusion properties of the ECS and the much less accurately defined positioning selleck chemical of signaling molecules in the neural cell membrane. This type of diffusible transmission is designated volume or extrasynaptic transmission. As described for calcium ions (Hrabetova et al., 2009), neurotransmitters (Scimemi & Beato, 2009) and proteins (Thorne et al., 2008) the diffusion properties depend on a variety of factors SP600125 nmr including temperature, viscosity, charge and shape of the ECS, collectively and formally characterized by the tortuosity (reviewed by Sykova & Nicholson, 2008). The ECM primarily determines the charge and viscosity of the ECS, whereas membrane protuberances of neurons and glial cells, such as spines and filopodia, cause the structural restrictions for free diffusion in the ECS, also defined as geometric tortuosity (Kullmann

et al., 1999). Measurements of extracellular ion concentrations during neuronal activity have revealed changes in the relation between potassium, sodium, calcium and chloride ions during synaptic transmission (Heinemann et al., 1977; Rausche et al., 1990) that influence the membrane potential of the active cell population. Hence local ion fluxes can function as feedback mechanisms for the active population of synapses Rebamipide (Rusakov & Fine, 2003). The high content of negatively charged CSPGs in the ECM is very likely to affect local

changes of ion concentrations. A recent study on diffusion properties of cations in the ECS suggests that negatively charged CSPGs change these diffusion properties in particular for calcium ions. By removing the charged chondroitin sulfate side chains with chondrotinase ABC, Hrabetova et al. (2009) were able to detect a global increase in the effective diffusion coefficient of bivalent ions such as calcium, whereas the diffusion properties of the monovalent cation tetraethylammonium did not change. Physiologically, a local depletion of extracellular calcium can occur as a result of the frequent activation of postsynaptic NMDA receptors and hence decrease the presynaptic release probability, as demonstrated for the CA3 mossy fiber synapse in the hippocampus (Rusakov & Fine, 2003). The ECM density is particularly high in the PNN around GABAergic, parvalbumin-containing fast-spiking interneurons. Because of their high negative charge, Hartig et al. (1999, 2001) postulated that one function of the PNN might be to increase the local ion buffer capacity in order to balance local depletion of cations during high-frequency firing activity.

Using comprehensive routinely collected surveillance data, we pre

Using comprehensive routinely collected surveillance data, we present quality of care measures for persons diagnosed with HIV infection at the national level for the first time. Almost all (97%) adults diagnosed with HIV infection in 2011 were linked to HIV care within 3 months, and 88% within 4

weeks. Furthermore, among adults diagnosed in 2010, 85% were retained in care in 2011 and 92% of those diagnosed late were receiving treatment. Collectively, these findings indicate that the NHS provides high-quality Ponatinib care to persons newly diagnosed with HIV infection in the UK. Importantly, there was little variation of linkage to care, retention and treatment coverage by sociodemographic characteristics and exposure category. There was no evidence of health inequalities with regard to access to and retention selleck inhibitor in HIV care in the UK. These findings are strikingly different from those of studies carried out in the USA, which show lower rates of linkage to and retention in care following diagnosis, with important inequalities in access

to health care [15]. Despite excellent HIV care, in 2011 almost half of adults diagnosed with HIV infection had a CD4 count at or below the threshold at which treatment should have been initiated. Patients diagnosed late have an 8-fold increased risk of mortality within a year of diagnosis compared with those diagnosed promptly. Reducing late diagnosis is also a public health priority, as HIV diagnosis provides awareness of infection and access to drugs to reduce viral load. Late HIV diagnosis is a key indicator for monitoring the success of testing interventions and is included in the Public Health Outcome Framework for England [16]. not Heterosexual men had the highest rate of late diagnosis compared

with other risk groups. This is probably a consequence of the impact of the universal offer of an HIV test during antenatal care and targeted testing campaigns aimed at MSM. The proportions of late diagnoses in both pregnant women and MSM have declined slightly over the past decade [1]. Nevertheless, an estimated 1000 MSM (a third of diagnoses] in 2011 were diagnosed late. The elevated proportion of late diagnoses among black men and women is largely the result of the high numbers of new diagnoses reported among adults of sub-Saharan origin, who acquired their infection before arriving in the UK [17]. Our analyses indicate that the reduction of late HIV diagnoses requires urgent investment to increase testing coverage and frequency among groups at highest risk of HIV infection. In addition, we demonstrate exceptionally high 1-year mortality rates among persons diagnosed late. These data highlight the importance of early ART, with the magnitude of the benefit of ART being greatest among older adults [18]. BHIVA Standards of Care guidelines recommend linkage to HIV care within 14 days of HIV diagnosis [6].

Phylogenetic reconstruction methods remain the only way to reliab

Phylogenetic reconstruction methods remain the only way to reliably infer historical events from gene sequences as they are the only methods that are based on a large body of work (Eisen, 2000). For example, phylogenetic methods

are designed to accommodate buy 5-Fluoracil variation in evolutionary rates and patterns within and between taxa (Ragan et al., 2006). However, it is not easy to extend phylogenetic methods to all genes, for example some gene families evolve so rapidly that orthologs cannot be confidently identified (Ragan, 2001). Other problems that may arise are the computational difficulties in inferring trees and assessing confidence intervals for large data sets. It is not surprising therefore that there is considerable interest in developing methods that can rapidly identify HGT without the need of phylogenetic trees. These heuristic methods have been referred to as surrogate methods (Ragan, 2001). An example of a surrogate method includes the examination of the patterns of best matches to different species using similarity search techniques to determine the best match for each gene in a genome. This approach has the advantage of speed and automation but does not have a high degree of accuracy. Some notable failures of this approach include the unsupported claim that

223 genes have been transferred from bacterial pathogens to humans (Lander et al., AZD6244 nmr 2001). These Quinapyramine findings were based on top hits from a blast database search; however, rigorous phylogenetic analyses showed these initial claims to be unsupportable (Stanhope et al., 2001). Similarly, another study based on blast database searches also reported

that Mycobacterium tuberculosis has 19 genes that originate from various eukaryotes (Gamieldien et al., 2002); again using phylogenetic analyses, this hypothesis was shown to be unsupportable (Kinsella & McInerney, 2003). Reasons for low levels of accuracy with these similarity searches include hidden paralogy, distant slowly evolving genes being detected as best matches or two closely related genes not matching well if they have evolved rapidly (Eisen, 1998). Other surrogate methods identify the regions within genomes that have atypical genomic characteristics (Fig. 1d,e). In theory when a gene is introduced into a recipient genome, it takes time for it to ameliorate to the recipients’ base composition. Therefore, foreign genes in a genome can be detected by identifying genes with unusual phenotypes such as atypical nucleotide composition or codon usage patterns (Lawrence & Ochman, 1998; Fig. 1d). This approach is attractive as it only requires one genome but does suffer from some obvious flaws. For example, atypical composition may be the result of selection or mutation bias. Furthermore, this approach cannot detect the transfers between species with similar base compositions.